PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G199600.1
Common NameB456_009G199600, LOC105769036
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 436aa    MW: 48047.7 Da    PI: 6.9168
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G199600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH14.66.1e-053223601255
                         HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         R +++ ++++ L++l+ +      +K + a++L +A+ YIk Lq
  Gorai.009G199600.1 322 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 360
                         7788899*********998.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.458310359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.67E-5320364No hitNo description
SuperFamilySSF474594.19E-11320374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-9324374IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MEPENAHHQH HLQDQLLGSS SSLPISPCYG VSSTHSWTPT TALNSSEFNP SCNGDILHSR  60
LKNDMLVSPQ NSSMIQGWTN NEGSFTTHSC HGLHLPKIKD ELSESITKFT DILSDSTSSV  120
IDSHHLPPPN YLKNNEQRDL SDLSQKLLLK TISSGFPMFS TGPEFYSTTQ NCSIPRNSFL  180
PSRGSFSQIY PSINISSLNQ ASSSPNIPSS FDMNNMEALD LLNPARFSRS SRFSYPSEDH  240
DNLDIYKEIS PSFGLHYHHN LQQSSQRPVA YTPSKTSPFP TEITEAKRPS ILPETKPAAP  300
TTTTAKKSRL ESRASCPPFK VRKEKLGDRI AALQQLVAPF GKTDTASVLM EAIGYIKFLQ  360
NQVETLSVPY MKLSRNKTSK SKQGGSTMED ENEEDEARPD LRSRGLCLVP LSCMSYMTSE  420
SGGGGIWPPP PNFTG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5866351e-135JX586635.1 Gossypium hirsutum clone NBRI_GE20500 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012444864.10.0PREDICTED: transcription factor bHLH110-like
TrEMBLA0A0D2QJG80.0A0A0D2QJG8_G
STRINGVIT_18s0001g12970.t011e-143(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93512533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27660.17e-78bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]